Comparison of nucleic acid simulation software
This is a list of notable computer programs that are used for nucleic acids simulations.
- Min – Optimization
- MD – Molecular dynamics
- MC – Monte Carlo
- REM – Replica exchange method
- Crt – Cartesian coordinates
- Int – Internal coordinates
- Exp – Explicit water
- Imp – Implicit water
- Lig – Ligand interactions
- GPU – Hardware accelerated
See also
- Nucleic acid structure prediction
- Molecular Modelling
- Molecular modeling on GPUs
- Molecular graphics
- Molecular mechanics
- Molecular dynamics
- Molecular design software
- Molecule editor
- Quantum chemistry computer programs
- List of molecular graphics systems
- List of protein structure prediction software
- List of sequence alignment software
- List of gene prediction software
- List of RNA structure prediction software
- Comparison of software for molecular mechanics modeling
- List of software for Monte Carlo molecular modeling
- List of software for nanostructures modeling
- Force field
- Comparison of force field implementations