List of protein structure prediction software

This list of protein structure prediction software summarizes notable used software tools in protein structure prediction, including homology modeling, protein threading, ab initio methods, secondary structure prediction, and transmembrane helix and signal peptide prediction.

Below is a list which separates programs according to the method used for structure prediction.

Detailed list of programs can be found at List of protein secondary structure prediction programs

• List of protein secondary structure prediction programs
• Comparison of nucleic acid simulation software
• List of software for molecular mechanics modeling
• Molecular design software
• Protein design
• AlphaFold

• bio.tools, finding more tools