UTP4

UTP4
Identifiers
Aliases	UTP4, CIRHIN, NAIC, TEX292, CIRH1A, small subunit processome component, UTP4 small subunit processome component
External IDs	OMIM: 607456; MGI: 1096573; GeneCards: UTP4
Gene location (Human)
Chr.	Chromosome 16 (human)
End	69,231,130 bp
Gene location (Mouse)
Chr.	Chromosome 8 (mouse)
End	107,649,720 bp
RNA expression pattern
	Top expressed in
	gonad; ; gastrocnemius muscle; ; human kidney; ; right testis; ; left testis; ; skeletal muscle tissue; ; muscle of thigh; ; stromal cell of endometrium; ; testicle; ; islet of Langerhans;
	Top expressed in
	primary oocyte; ; epiblast; ; primitive streak; ; Gonadal ridge; ; morula; ; morula; ; embryo; ; fetal liver hematopoietic progenitor cell; ; tail of embryo; ; maxillary prominence;
	More reference expression data
	n/a
Gene ontology
Molecular function	protein binding; RNA binding;
Cellular component	fibrillar center; nucleolus; nucleus; t-UTP complex; chromosome; nucleoplasm; 90S preribosome; small-subunit processome;
Biological process	regulation of transcription, DNA-templated; maturation of SSU-rRNA; transcription, DNA-templated; rRNA processing; ribosome biogenesis; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA);
	Sources:Amigo / QuickGO
Orthologs
Databases	NCBI: entry; OMA: entry
	84916
	21771
	ENSG00000262788; ENSG00000141076
	ENSMUSG00000041438
	Q969X6
	Q8R2N2
	NM_032830; NM_001318391
	NM_011574; NM_001358982
	NP_001305320; NP_116219
	NP_035704; NP_001345911
	Wikidata
View/Edit Human	View/Edit Mouse

UTP4 is a gene that encodes the protein Cirhin, the gene is also known as CIRH1A and NAIC. This protein contains a WD40 repeat and is localized to the nucleolus where it colocates with UTP15 and WDR43. Biallelic mutations to UTP4 have been associated with North American Indian childhood cirrhosis, a form of inherited cirrhosis of the liver occurring in American Indian children from the Abitibi region of northern Quebec.

References

1 2 3 ENSG00000141076 GRCh38: Ensembl release 89: ENSG00000262788, ENSG00000141076 – Ensembl, May 2017
1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000041438 – Ensembl, May 2017
↑ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
↑ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
↑ Bétard C, Rasquin-Weber A, Brewer C, Drouin E, Clark S, Verner A, et al. (July 2000). "Localization of a recessive gene for North American Indian childhood cirrhosis to chromosome region 16q22-and identification of a shared haplotype". American Journal of Human Genetics. 67 (1): 222–8. doi:10.1086/302993. PMC 1287080. PMID 10820129.
↑ Chagnon P, Michaud J, Mitchell G, Mercier J, Marion JF, Drouin E, et al. (December 2002). "A missense mutation (R565W) in cirhin (FLJ14728) in North American Indian childhood cirrhosis". American Journal of Human Genetics. 71 (6): 1443–9. doi:10.1086/344580. PMC 378590. PMID 12417987.
↑ "Entrez Gene: CIRH1A cirrhosis, autosomal recessive 1A (cirhin)".
↑ Sato M, Araki N, Kumeta M, Takeyasu K, Taguchi Y, Asai T, et al. (December 2013). "Interaction, mobility, and phosphorylation of human orthologues of WD repeat-containing components of the yeast SSU processome t-UTP sub-complex". Biochemistry and Cell Biology. 91 (6): 466–75. doi:10.1139/bcb-2013-0062. PMID 24219289.
↑ Chagnon P, Michaud J, Mitchell G, Mercier J, Marion JF, Drouin E, et al. (December 2002). "A missense mutation (R565W) in cirhin (FLJ14728) in North American Indian childhood cirrhosis". American Journal of Human Genetics. 71 (6): 1443–9. doi:10.1086/344580. PMC 378590. PMID 12417987.{{cite journal}}: CS1 maint: deprecated archival service (link)

External links

Human UTP4 genome location and UTP4 gene details page in the UCSC Genome Browser.

This article on a gene on human chromosome 16 is a stub. You can help Wikipedia by adding missing information.

[refGRCh38Ensembl-1] 1 2 3 ENSG00000141076 GRCh38: Ensembl release 89: ENSG00000262788, ENSG00000141076 – Ensembl, May 2017

[refGRCm38Ensembl-2] 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000041438 – Ensembl, May 2017

[3] "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[4] "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[pmid10820129-5] Bétard C, Rasquin-Weber A, Brewer C, Drouin E, Clark S, Verner A, et al. (July 2000). "Localization of a recessive gene for North American Indian childhood cirrhosis to chromosome region 16q22-and identification of a shared haplotype". American Journal of Human Genetics. 67 (1): 222–8. doi:10.1086/302993. PMC 1287080. PMID 10820129.

[pmid12417987-6] Chagnon P, Michaud J, Mitchell G, Mercier J, Marion JF, Drouin E, et al. (December 2002). "A missense mutation (R565W) in cirhin (FLJ14728) in North American Indian childhood cirrhosis". American Journal of Human Genetics. 71 (6): 1443–9. doi:10.1086/344580. PMC 378590. PMID 12417987.

[entrez-7] "Entrez Gene: CIRH1A cirrhosis, autosomal recessive 1A (cirhin)".

[8] Sato M, Araki N, Kumeta M, Takeyasu K, Taguchi Y, Asai T, et al. (December 2013). "Interaction, mobility, and phosphorylation of human orthologues of WD repeat-containing components of the yeast SSU processome t-UTP sub-complex". Biochemistry and Cell Biology. 91 (6): 466–75. doi:10.1139/bcb-2013-0062. PMID 24219289.

[9] Chagnon P, Michaud J, Mitchell G, Mercier J, Marion JF, Drouin E, et al. (December 2002). "A missense mutation (R565W) in cirhin (FLJ14728) in North American Indian childhood cirrhosis". American Journal of Human Genetics. 71 (6): 1443–9. doi:10.1086/344580. PMC 378590. PMID 12417987.{{cite journal}}: CS1 maint: deprecated archival service (link)

UTP4

References

Further reading

External links