Edaphobacter
Genus of bacterium
Edaphobacter is a genus of Gram-negative , rod shaped bacteria. It contains seven species:
Phylogeny
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI).
16S rRNA based LTP _10_2024
120 marker proteins based GTDB 10-RS226
Bryocella elongata
Edaphobacter dinghuensis
Edaphobacter lichenicola
Granulicella ~
Granulicella sibirica
Granulicella aggregans
Granulicella rosea
Granulicella tundricola
Granulicella pectinivorans
Granulicella arctica
Granulicella sapmiensis
Granulicella
G. cerasi Yamada et al. 2014
G. mallensis Mannisto et al. 2012
G. sapmiensis Mannisto et al. 2012
Edaphobacter
Granulicella pectinivorans Pankratov & Dedysh 2010
Granulicella sibirica Oshkin et al. 2019
Granulicella rosea Pankratov & Dedysh 2010
Granulicella tundricola Mannisto et al. 2012
Granulicella aggregans Pankratov & Dedysh 2010
Granulicella arctica Mannisto et al. 2012
E. lichenicola Belova et al. 2018
Tunturiibacter psychrotolerans corrig. Messyasz et al. 2024
Tunturiibacter empetritectus corrig. Messyasz et al. 2024
Tunturiibacter gelidoferens corrig. Messyasz et al. 2024
E. acidisoli Xia et al. 2017b
E. dinghuensis Wang et al. 2016
E. paludis Huber et al. 2024
E. bradus Xia et al. 2018b
References
↑ Koch, I. H.; Gich, F.; Dunfield, P. F.; Overmann, J. (1 May 2008). "Edaphobacter modestus gen. nov., sp. nov., and Edaphobacter aggregans sp. nov., acidobacteria isolated from alpine and forest soils" . International Journal of Systematic and Evolutionary Microbiology . 58 (5): 1114– 1122. doi :10.1099/ijs.0.65303-0 . PMID 18450699 .
1 2 Edaphobacter in LPSN ; Freese, H. M.; Meier-Kolthoff, J. P.; Sardà Carbasse, J.; Afolayan, A. O.; Göker, M. (2026). "TYGS and LPSN in 2025: a Global Core Biodata Resource for genome-based classification and nomenclature of prokaryotes within DSMZ Digital Diversity". Nucleic Acids Research . 54 (D1): D884– D891. doi :10.1093/nar/gkaf1110 .
↑ Schoch CL; et al. "Edaphobacter" . National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2025-06-05 .
↑ "The LTP" . Retrieved 10 December 2024 .
↑ "LTP_all tree in newick format" . Retrieved 10 December 2024 .
↑ "LTP_10_2024 Release Notes" (PDF) . Retrieved 10 December 2024 .
↑ "GTDB release 10-RS226" . Genome Taxonomy Database . Retrieved 1 May 2025 .
↑ "bac120_r226.sp_label" . Genome Taxonomy Database . Retrieved 1 May 2025 .
↑ "Taxon History" . Genome Taxonomy Database . Retrieved 1 May 2025 .
Candidate Phyla Radiation
Thermotogati
"Cyanoprokaryota" "Firmicutes"
Bacillota
Bacillota_D
Bacillota _E
Bacillota_G
"Hydrogenisporia"
Limnochordia
"Clostridiota"
"Clostridiia "
"Thermoanaerobacteria"
Thermosediminibacteria
"Desulfotomaculota "
"Carboxydocellia"
"Carboxydothermia"
"Dehalobacteriia"
Desulfitisporia
Desulfitobacteriia
Desulfotomaculia
"Moorellia"
Peptococcia
Syntrophomonadia
"Thermacetogeniia"
Thermincolia
"Halanaerobiota"
"Selenobacteria"
Incertae sedis