Edaphobacter

Edaphobacter
Edaphobacter modestus
Edaphobacter modestus
Scientific classification Edit this classification
Domain: Bacteria
Kingdom: Pseudomonadati
Phylum: Acidobacteriota
Class: "Acidobacteriia"
Order: Acidobacteriales
Family: Acidobacteriaceae
Genus: Edaphobacter
Koch et al. 2008
Type species
Edaphobacter modestus
Koch et al. 2008
Species

Edaphobacter is a genus of Gram-negative, rod shaped bacteria. It contains seven species:

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI).

16S rRNA based LTP_10_2024 120 marker proteins based GTDB 10-RS226

Bryocella elongata

Granulicella

G. mallensis

G. acidiphila

G. cerasi

G. paludicola

Edaphobacter

E. acidisoli

E. bradus

E. aggregans

E. flagellatus

E. modestus

Edaphobacter dinghuensis

Edaphobacter lichenicola

Granulicella~

Granulicella sibirica

Granulicella aggregans

Granulicella rosea

Granulicella tundricola

Granulicella pectinivorans

Granulicella arctica

Granulicella sapmiensis
Granulicella

G. cerasi Yamada et al. 2014

Bryocella elongata Dedysh et al. 2012

G. paludicola Pankratov & Dedysh 2010

G. mallensis Mannisto et al. 2012

G. sapmiensis Mannisto et al. 2012

Edaphobacter

Granulicella pectinivorans Pankratov & Dedysh 2010

Granulicella sibirica Oshkin et al. 2019

Granulicella rosea Pankratov & Dedysh 2010

Granulicella tundricola Mannisto et al. 2012

Granulicella aggregans Pankratov & Dedysh 2010

Granulicella arctica Mannisto et al. 2012

E. lichenicola Belova et al. 2018

Tunturiibacter psychrotolerans corrig. Messyasz et al. 2024

Tunturiibacter empetritectus corrig. Messyasz et al. 2024

Tunturiibacter gelidoferens corrig. Messyasz et al. 2024

E. acidisoli Xia et al. 2017b

E. dinghuensis Wang et al. 2016

E. paludis Huber et al. 2024

E. bradus Xia et al. 2018b

E. modestus Koch et al. 2008

E. aggregans Koch et al. 2008

E. flagellatus Xia et al. 2018b

See also

References

  1. ↑ Koch, I. H.; Gich, F.; Dunfield, P. F.; Overmann, J. (1 May 2008). "Edaphobacter modestus gen. nov., sp. nov., and Edaphobacter aggregans sp. nov., acidobacteria isolated from alpine and forest soils". International Journal of Systematic and Evolutionary Microbiology. 58 (5): 1114–1122. doi:10.1099/ijs.0.65303-0. PMID 18450699.
  2. 1 2 Edaphobacter in LPSN; Freese, H. M.; Meier-Kolthoff, J. P.; Sardà Carbasse, J.; Afolayan, A. O.; Göker, M. (2026). "TYGS and LPSN in 2025: a Global Core Biodata Resource for genome-based classification and nomenclature of prokaryotes within DSMZ Digital Diversity". Nucleic Acids Research. 54 (D1): D884–D891. doi:10.1093/nar/gkaf1110.
  3. ↑ Schoch CL; et al. "Edaphobacter". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2025-06-05.
  4. ↑ "The LTP". Retrieved 10 December 2024.
  5. ↑ "LTP_all tree in newick format". Retrieved 10 December 2024.
  6. ↑ "LTP_10_2024 Release Notes" (PDF). Retrieved 10 December 2024.
  7. ↑ "GTDB release 10-RS226". Genome Taxonomy Database. Retrieved 1 May 2025.
  8. ↑ "bac120_r226.sp_label". Genome Taxonomy Database. Retrieved 1 May 2025.
  9. ↑ "Taxon History". Genome Taxonomy Database. Retrieved 1 May 2025.