RPGRIP1L

RPGRIP1L
Identifiers
AliasesRPGRIP1L, CORS3, FTM, JBTS7, MKS5, NPHP8, PPP1R134, RPGRIP1 like, COACH3
External IDsOMIM: 610937; MGI: 1920563; GeneCards: RPGRIP1L
Available structures
PDBOrtholog search: PDBe RCSB
Orthologs
DatabasesNCBI: entry; OMA: entry
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_173431

RefSeq (protein)

NP_775607

Location (UCSC)Chr 16: 53.6 – 53.7 MbChr 8: 91.94 – 92.04 Mb
PubMed search
Wikidata
View/Edit HumanView/Edit Mouse

Protein fantom, also called RPGRIP1-like protein, is a protein that in humans is encoded by the RPGRIP1L gene.

Function

The protein encoded by this gene is localized to primary cilia and centrosomes in ciliated human epithelial kidney cells and retinal pigment epithelial cells . RPGRIP1L colocalized at the basal body-centrosome complex with the proteins NPHP4, NPHP6, and TUBG1. Also, it can interact with myosin Va.

Clinical significance

Mutations in the RPGRIP1L gene are associated with Joubert syndrome and Meckel syndrome which belong to a group of developmental autosomal recessive disorders that are associated with cilium dysfunction. Mutations in this gene are also associated with nephronophthisis. Copy number variation affecting the gene was associated with schizophrenia in one study.

A genetic variation within the RPGRIP1L gene, rs3213758, is associated with increased BMI. Genetic variations strongly associated with obesity within the FTO gene have also been implicated in the control of RPGRIP1L expression. Mice with decreased expression of RPGRIP1L are fatter, eat more, have diminished sensitivity to the hormone leptin that normally reduces food intake, and display altered morphology of the brain center that regulates feeding. Similarly, cells derived from Joubert patients with RPGRIP1L mutations have decreased leptin sensitivity, and neurons important for food intake segregating for obesity-risk variations at the FTO locus have decreased RPGRIP1L expression and diminished outgrowth. These studies suggest that RPGRIP1L is a gene important in human obesity.

References

  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000103494 – Ensembl, May 2017
  2. 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000033282 – Ensembl, May 2017
  3. ↑ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ↑ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ↑ Nagase T, Ishikawa K, Suyama M, Kikuno R, Hirosawa M, Miyajima N, et al. (February 1999). "Prediction of the coding sequences of unidentified human genes. XIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro". DNA Research. 6 (1): 63–70. doi:10.1093/dnares/6.1.63. PMID 10231032.
  6. 1 2 Delous M, Baala L, Salomon R, Laclef C, Vierkotten J, Tory K, et al. (July 2007). "The ciliary gene RPGRIP1L is mutated in cerebello-oculo-renal syndrome (Joubert syndrome type B) and Meckel syndrome". Nature Genetics. 39 (7): 875–881. doi:10.1038/ng2039. PMID 17558409. S2CID 6982566.
  7. ↑ Arts HH, Doherty D, van Beersum SE, Parisi MA, Letteboer SJ, Gorden NT, et al. (July 2007). "Mutations in the gene encoding the basal body protein RPGRIP1L, a nephrocystin-4 interactor, cause Joubert syndrome". Nature Genetics. 39 (7): 882–888. doi:10.1038/ng2069. PMID 17558407. S2CID 12910768.
  8. ↑ Assis LH, Silva-Junior RM, Dolce LG, Alborghetti MR, Honorato RV, Nascimento AF, et al. (March 2017). "The molecular motor Myosin Va interacts with the cilia-centrosomal protein RPGRIP1L". Scientific Reports. 7 (1) 43692. Bibcode:2017NatSR...743692A. doi:10.1038/srep43692. PMC 5339802. PMID 28266547.
  9. ↑ Devuyst O, Arnould VJ (May 2008). "Mutations in RPGRIP1L: extending the clinical spectrum of ciliopathies". Nephrology, Dialysis, Transplantation. 23 (5): 1500–1503. doi:10.1093/ndt/gfn033. PMID 18281315.
  10. ↑ Gene Overview of All Published Schizophrenia-Association Studies for RPGRIP1L Archived 2009-02-21 at the Wayback Machine – SzGene database at Schizophrenia Research Forum.
  11. ↑ Hoffmann TJ, Choquet H, Yin J, Banda Y, Kvale MN, Glymour M, et al. (October 2018). "A Large Multiethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci". Genetics. 210 (2): 499–515. doi:10.1534/genetics.118.301479. PMC 6216593. PMID 30108127.
  12. ↑ Turcot V, Lu Y, Highland HM, Schurmann C, Justice AE, Fine RS, et al. (January 2018). "Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity". Nature Genetics. 50 (1): 26–41. doi:10.1038/s41588-017-0011-x. PMC 5945951. PMID 29273807.
  13. ↑ Stratigopoulos G, Leibel RL (December 2010). "FTO gains function". Nature Genetics. 42 (12): 1038–1039. doi:10.1038/ng1210-1038. PMC 3818900. PMID 21102620.
  14. 1 2 Stratigopoulos G, Martin Carli JF, O'Day DR, Wang L, LeDuc CA, Lanzano P, et al. (May 2014). "Hypomorphism for RPGRIP1L, a ciliary gene vicinal to the FTO locus, causes increased adiposity in mice". Cell Metabolism. 19 (5): 767–779. doi:10.1016/j.cmet.2014.04.009. PMC 4131684. PMID 24807221.
  15. ↑ Stratigopoulos G, Burnett LC, Rausch R, Gill R, Penn DB, Skowronski AA, et al. (May 2016). "Hypomorphism of Fto and Rpgrip1l causes obesity in mice". The Journal of Clinical Investigation. 126 (5): 1897–1910. doi:10.1172/JCI85526. PMC 4855930. PMID 27064284.
  16. 1 2 Wang L, De Solis AJ, Goffer Y, Birkenbach KE, Engle SE, Tanis R, et al. (February 2019). "Ciliary gene RPGRIP1L is required for hypothalamic arcuate neuron development". JCI Insight. 4 (3) e123337. doi:10.1172/jci.insight.123337. PMC 6413800. PMID 30728336.
  17. ↑ Stratigopoulos G, LeDuc CA, Cremona ML, Chung WK, Leibel RL (January 2011). "Cut-like homeobox 1 (CUX1) regulates expression of the fat mass and obesity-associated and retinitis pigmentosa GTPase regulator-interacting protein-1-like (RPGRIP1L) genes and coordinates leptin receptor signaling". The Journal of Biological Chemistry. 286 (3): 2155–2170. doi:10.1074/jbc.m110.188482. PMC 3023512. PMID 21037323.